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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904717.1_cds_XP_016454842.1_48827
CDS Infomation

[gene=LOC107779016] [db_xref=GeneID:107779016] [protein=1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like] [protein_id=XP_016454842.1] [location=join(37663..37759,37852..38027,38585..38671,39269..39394,39524..39586,40302..40451,40626..40693,40928..41039,41182..41286,41402..41523,41687..41833,42924..43092)] [gbkey=CDS]
Sequence

ATGGCGCTGAATTTGCTGTCCCCTGCTGAAATTAAGACCATCTCTTTCTTGGACACCTCC
AAATCCAGCTACAATCTTAACCACCTCAAGTTCCAAGGTGGAGTGTGTGTCAAAAGAAAG
GAGTGCCGTGGGATTTCTGGTAAGAGGGTTCAGTGTTCAGTTCAGGCACCTCCTCCTGCC
TGGCCTGGAAGAGCTGTTGCTGAGGCCCGGAAAAGTTGGGATGGCCCAAAGCCTATCTCA
ATTGTTGGGTCCACTGGCTCTATCGGAACTCAGACATTGGATATAGTCGCTGAGAATCCG
GATAAGTTTAGAGTTGTCGCACTAGCTGCTGGTTCAAATGTTACTCTTCTTGCTGATCAG
GTCAAAACATTCAAACCAAAACTAGTTGCTGTTAGAAATGAGTCATTGGTTGAGGAACTC
AAAGATGCTCTGGCTGATATGGAAGACAAGCCTGAGATTATCCCTGGTGAGCAGGGGATC
ATCGAGGTCGCCCGCCATCCTGATGCTGTCACTGTAGTTACAGGAATAGTTGGTTGCGCA
GGTTTAAAGCCTACAGTGGCTGCCATAAAAGCAGGAAAGGACATTGCCTTGGCCAATAAA
GAGACTTTAATTGCTGGTGGTCCATTTGTTCTTCCTCTTGCGCACAAGCATAAGGTGAAG
ATTCTTCCTGCAGATTCAGAACATTCAGCTATATTCCAGTGCATACAAGGCTTGCCAGAG
GGTGCCCTTAGGCGCATTATATTAACTGCATCTGGAGGGGCTTTCAGGGACTTGCCAGTT
GAGAAGTTGAAAGAAGTTAAAGTAGCTGATGCTTTGAAGCATCCCAATTGGAACATGGGG
AAAAAGATTACTGTTGATTCTGCCACCTTATTCAATAAGGGTCTTGAAGTTATTGAAGCT
CACTACCTTTTCGGAGCTGAGTATGATGACATTGAAATTGTCATCCATCCCCAGTCCATC
ATACATTCAATGGTGGAAACACAGGATTCATCAGTATTGGCACAGCTGGGGTGGCCTGAT
ATGCGTTTGCCCATCCTTTATACTTTATCCTGGCCCGACAGAATTTACTGTTCGGAGGTT
ACTTGGCCGCGCCTTGATCTTTGCAAGCTCGGATCATTGACATTTAAAGCCCCTGATAAT
GTGAAATATCCATCCATGGAGCTGGCTTACGCTGCTGGTCGCGCTGGAGGGACCATGACT
GGAGTTCTAAGTGCAGCAAACGAAAAGGCAGTGGAATTATTTATTAGTGAGAGAATTAGC
TACTTGGACATTTTCAAGATTGTGGAGCTAACATGCGCGAAGCATCGGGAAGAGTTGGTG
TCTTCTCCATCGCTGGAGGAAATCATACATTACGATTTGTGGGCTCGAGATTATGCAGCC
AGTTTGGAAACCTCAGCTGGTTTTAGTCCAGCTCTTGTATAA

Peptide Sequence

PEP ID

XP_016454842.1
PEP Infomation

PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Nicotiana tabacum]
Sequence

MALNLLSPAEIKTISFLDTSKSSYNLNHLKFQGGVCVKRKECRGISGKRVQCSVQAPPPA
WPGRAVAEARKSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQ
VKTFKPKLVAVRNESLVEELKDALADMEDKPEIIPGEQGIIEVARHPDAVTVVTGIVGCA
GLKPTVAAIKAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPE
GALRRIILTASGGAFRDLPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEA
HYLFGAEYDDIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCSEV
TWPRLDLCKLGSLTFKAPDNVKYPSMELAYAAGRAGGTMTGVLSAANEKAVELFISERIS
YLDIFKIVELTCAKHREELVSSPSLEEIIHYDLWARDYAASLETSAGFSPALV

Transcript Sequence

Gene sequence data has not been registered.